PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031972-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 94aa    MW: 10519.8 Da    PI: 9.3337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031972-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-0821611454
                        HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        d+i +  ++L++l+P+ + + +s K+s + +L+++++YI+sL
  WALNUT_00031972-RA 21 DQITDLVSKLQQLIPEiR-NRRSDKVSASKVLQETCNYIRSL 61
                        6899999*********77.89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.483761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-62161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-82165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-82179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSSSRQ QSGVSRNITD DQITDLVSKL QQLIPEIRNR RSDKVSASKV LQETCNYIRS  60
LHKEVDGLSD RLSDLLATTD TDSAQAAIIR SLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226915.16e-47hypothetical protein PRUPE_ppa016030mg
SwissprotQ8GW326e-39PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A151RGX81e-48A0A151RGX8_CAJCA; Transcription factor bHLH135 family
STRINGGLYMA08G41000.11e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.15e-40bHLH family protein